SMTL ID : 6ka0.1 (1 other biounit)

Silver-bound E.coli Malate dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

3 x AG: SILVER ION(Non-covalent)

AG.1: 7 residues within 4Å: Chain A: D.71, K.111, A.112, C.113, K.142, L.242 Ligands: TRS.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.113 AG.2: 1 residues within 4Å: Chain A: C.251 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.251, H2O.1 AG.4: 6 residues within 4Å: Chain B: D.71, K.111, A.112, C.113, L.242 Ligands: TRS.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.113

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 8 residues within 4Å: Chain A: D.71, K.111, A.112, C.113, K.142, L.242, K.272 Ligands: AG.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.71, A:K.111, A:C.113, A:K.142, A:N.273 TRS.5: 9 residues within 4Å: Chain B: M.1, D.71, K.111, A.112, C.113, K.142, L.242, K.272 Ligands: AG.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.111, B:C.113, B:K.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., MDH is a major silver target in E. coli. To Be Published

Release Date

2020-06-17

Peptides

Malate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Malate dehydrogenase

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