SMTL ID : 6kaf.1

C2S2M2N2-type PSII-LHCII

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-18-2-2-2-mer
Ligands
252 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
30 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Covalent)(Non-covalent)
20 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
40 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)(Covalent)
122 x CHL: CHLOROPHYLL B(Non-covalent)(Covalent)
16 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)(Covalent)
2 x FE2: FE (II) ION(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
4 x PHO: PHEOPHYTIN A(Non-covalent)
22 x BCR: BETA-CAROTENE(Non-covalent)(Covalent)
8 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)(Covalent)
4 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
14 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)(Covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
10 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)(Covalent)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Shen, L. et al., Structure of a C2S2M2N2-type PSII-LHCII supercomplex from the green algaChlamydomonas reinhardtii. Proc.Natl.Acad.Sci.USA (2019)
Release Date
2019-10-23
Peptides
Chlorophyll a-b binding protein CP29: Al
Photosystem II protein D1: BQ
Photosystem II D2 protein: Cq
Cytochrome b559 subunit beta: DS
Photosystem II reaction center protein H: ET
Photosystem II reaction center protein I: FU
Photosystem II reaction center protein J, PsbJ: GV
Photosystem II reaction center protein K: HW
Photosystem II reaction center protein L: IX
Photosystem II reaction center protein M: JY
Oxygen-evolving enhancer protein 1 of photosystem II: Kp
Photosystem II reaction center protein T: LZ
Photosystem II reaction center W protein, chloroplastic: M0
4.1 kDa photosystem II subunit: Nr
Photosystem II reaction center protein Z: O1
Photosystem II reaction center protein 30, Psb30: P2
Cytochrome b559 subunit alpha: Rt
Chlorophyll a-b binding protein, chloroplastic: 3456789abcdefghijk
Chlorophyll a-b binding protein, chloroplastic: mv
Photosystem II CP43 reaction center protein: nu
Photosystem II CP47 reaction center protein: os
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
r
l
R
B
a
Q
A
C
d
q
D
D
f
S
F
E
h
T
H
F
i
U
I
G
j
V
J
H
k
W
K
I
l
X
L
J
m
Y
M
K
o
p
O
L
t
Z
T
M
w
0
W
N
x
r
X
O
z
1
Z
P
Y
2
y
R
E
t
e
3
1
4
2
5
3
6
4
7
5
8
6
9
v
a
p
b
q
c
V
d
P
e
Q
f
U
g
N
h
G
i
u
j
n
k
g
m
S
v
s
n
C
u
c
o
B
s
b
Membrane
We predict this structure to be a membrane protein.

Chlorophyll a-b binding protein CP29

Toggle Identical (Al)

Photosystem II protein D1

Toggle Identical (BQ)

Photosystem II D2 protein

Toggle Identical (Cq)

Cytochrome b559 subunit beta

Toggle Identical (DS)

Photosystem II reaction center protein H

Toggle Identical (ET)

Photosystem II reaction center protein I

Toggle Identical (FU)

Photosystem II reaction center protein J, PsbJ

Toggle Identical (GV)

Photosystem II reaction center protein K

Toggle Identical (HW)

Photosystem II reaction center protein L

Toggle Identical (IX)

Photosystem II reaction center protein M

Toggle Identical (JY)

Oxygen-evolving enhancer protein 1 of photosystem II

Toggle Identical (Kp)

Photosystem II reaction center protein T

Toggle Identical (LZ)

Photosystem II reaction center W protein, chloroplastic

Toggle Identical (M0)

4.1 kDa photosystem II subunit

Toggle Identical (Nr)

Photosystem II reaction center protein Z

Toggle Identical (O1)

Photosystem II reaction center protein 30, Psb30

Toggle Identical (P2)

Cytochrome b559 subunit alpha

Toggle Identical (Rt)

Chlorophyll a-b binding protein, chloroplastic

Toggle Identical (34679acdfij) Toggle Identical (58behk)

Chlorophyll a-b binding protein, chloroplastic

Toggle Identical (mv)

Photosystem II CP43 reaction center protein

Toggle Identical (nu)

Photosystem II CP47 reaction center protein

Toggle Identical (os)

Related Entries With Identical Sequence

6kac.1 | 6kad.1 | 7dz7.1 | 7dz8.1 | 7e0h.1 | 7e0i.1 | 7e0j.1 | 7e0k.1