SMTL ID : 6kbi.1

Crystal structure of ErbB3 N418Q mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: H.386, M.387, H.388, N.389, P.493 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 5 residues within 4Å: Chain B: H.386, M.387, H.388, N.389, P.493 No protein-ligand interaction detected (PLIP)

13 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 8 residues within 4Å: Chain A: R.62, E.63, C.224, F.225, A.226, C.227, N.231, G.234 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.62, A:G.234 NAG.3: 2 residues within 4Å: Chain A: L.307, N.334 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.334 NAG.4: 3 residues within 4Å: Chain A: R.369, R.372, N.395 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.372 NAG.5: 3 residues within 4Å: Chain A: N.450, T.452, K.453 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.450, A:K.453 NAG.6: 2 residues within 4Å: Chain A: N.503, T.512 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.503 NAG.7: 1 residues within 4Å: Chain A: N.547 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.547 NAG.9: 7 residues within 4Å: Chain B: V.39, R.62, E.63, C.224, F.225, N.231, G.234 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.62 NAG.10: 3 residues within 4Å: Chain B: L.307, V.333, N.334 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.333 Hydrogen bonds: B:N.334 NAG.11: 3 residues within 4Å: Chain B: R.369, R.372, N.395 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:R.372 NAG.12: 3 residues within 4Å: Chain B: N.450, T.452, K.453 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.450, B:K.453 NAG.13: 4 residues within 4Å: Chain B: L.484, R.502, N.503, T.512 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.512 NAG.14: 4 residues within 4Å: Chain B: N.547, T.553, C.554, A.555 No protein-ligand interaction detected (PLIP) NAG.15: 2 residues within 4Å: Chain B: H.595, N.597 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.597

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takahashi, M. et al., Crystal structure of ErbB3 N418Q mutant. To Be Published

Release Date

2020-07-01

Peptides

Receptor tyrosine-protein kinase erbB-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor tyrosine-protein kinase erbB-3