SMTL ID : 6kc4.5 (5 other biounits)

Crystal structure of human Fer SH2 domain bound to a phosphopeptide (DEpYENVD)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x ASP- GLU- PTR- GLU- ASN- VAL: phosphopeptide (EDpYENVD)(Non-covalent)

ASP-GLU-PTR-GLU-ASN-VAL.1: 12 residues within 4Å: Chain A: R.17, R.33, S.35, H.36, G.37, K.38, V.43, R.53, H.54, F.55, I.56, Q.58 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:V.43, A:R.53, A:H.54, A:F.55, A:I.56 Hydrogen bonds: A:R.17, A:R.17, A:H.36, A:G.37, A:H.54, A:I.56, A:I.56, A:K.91 Water bridges: A:R.17, A:R.33, A:R.33, A:H.36, A:H.54, A:H.54 Salt bridges: A:R.17, A:R.17, A:R.33, A:R.53 pi-Cation interactions: A:R.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsuura, Y., High-resolution structural analysis shows how different crystallographic environments can induce alternative modes of binding of a phosphotyrosine peptide to the SH2 domain of Fer tyrosine kinase. Protein Sci. (2019)

Release Date

2019-09-04

Peptides

Tyrosine-protein kinase Fer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Tyrosine-protein kinase Fer

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