SMTL ID : 6kc5.1

HOIP-HOIPIN1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.24, C.27, C.43, C.46 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.24, A:C.27, A:C.43, A:C.46 ZN.2: 5 residues within 4Å: Chain A: C.51, C.54, H.79, C.83, F.85 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.51, A:C.54, A:H.79, A:C.83 ZN.3: 5 residues within 4Å: Chain A: C.64, C.69, V.71, H.76, H.78 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.64, A:C.69, A:H.76, A:H.78 ZN.4: 4 residues within 4Å: Chain A: C.122, C.139, C.151, H.154 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.122, A:C.139, A:C.151, A:H.154

1 x D5U: 2-[3-(2-methoxyphenyl)-3-oxidanylidene-propyl]benzoic acid(Covalent)

D5U.5: 8 residues within 4Å: Chain A: G.37, C.38, M.39, H.40, F.58, L.75, F.85, R.88 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.40, A:F.58, A:L.75 Hydrogen bonds: A:M.39 Salt bridges: A:R.88

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: E.126, Q.127, K.128, A.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.128, A:K.128, A:A.138 GOL.7: 8 residues within 4Å: Chain A: R.81, Y.86, Y.174, E.178, T.181, A.182, R.185, Y.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.86, A:R.185 GOL.8: 4 residues within 4Å: Chain A: N.102, V.104, H.166, L.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.102, A:H.166 GOL.9: 5 residues within 4Å: Chain A: N.103, V.104, M.105, H.166, R.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.103, A:M.105 Water bridges: A:R.223

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.10: 8 residues within 4Å: Chain A: P.25, Y.55, N.56, P.80, L.216, G.217, Q.218, S.219 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.56, A:Q.218, A:S.219 Water bridges: A:S.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oikawa, D. et al., Molecular bases for HOIPINs-mediated inhibition of LUBAC and innate immune responses. Commun Biol (2020)

Release Date

2020-04-15

Peptides

E3 ubiquitin-protein ligase RNF31: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase RNF31

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