SMTL ID : 6kd9.1

Binding pose 1 of 2-CF3 bound AsqJ complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.153, D.155, H.230 Ligands: SIN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.153, A:D.155, A:H.230, H2O.1 FE.4: 4 residues within 4Å: Chain B: H.153, D.155, H.230 Ligands: SIN.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.153, B:D.155, B:H.230, H2O.2

2 x CV3: (3~{Z})-4-methyl-3-[[4-(trifluoromethyl)phenyl]methylidene]-1~{H}-1,4-benzodiazepine-2,5-dione(Non-covalent)

CV3.2: 17 residues within 4Å: Chain A: N.89, V.91, L.92, L.98, M.141, Q.150, P.151, H.153, R.154, D.155, M.156, F.158, N.176, T.246, T.248 Chain B: I.292 Ligands: SIN.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.91, A:L.92, A:L.98, A:F.158 Hydrogen bonds: A:N.89, A:M.156, A:R.157, A:F.158 pi-Stacking: A:H.153 Halogen bonds: A:V.91 CV3.5: 17 residues within 4Å: Chain A: I.292 Chain B: N.89, V.91, L.92, L.98, M.137, M.141, Q.150, P.151, H.153, R.154, D.155, M.156, F.158, T.246, T.248 Ligands: SIN.6 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.91, B:L.92, B:L.98, B:F.158, B:T.246 Hydrogen bonds: B:N.89, B:M.156, B:R.157 Water bridges: B:F.158 pi-Stacking: B:H.153 Halogen bonds: B:V.91

2 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 9 residues within 4Å: Chain A: M.141, Q.150, L.178, T.191, G.232, R.242, L.244 Ligands: FE.1, CV3.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.150 Salt bridges: A:R.242 SIN.6: 9 residues within 4Å: Chain B: M.141, Q.150, L.178, T.191, G.232, R.242, L.244 Ligands: FE.4, CV3.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.150 Salt bridges: B:R.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, H.J. et al., Binding pose 1 of 2-CF3 bound AsqJ complex. J.Am.Chem.Soc. (2020)

Release Date

2020-03-18

Peptides

Iron/alpha-ketoglutarate-dependent dioxygenase asqJ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Iron/alpha-ketoglutarate-dependent dioxygenase asqJ

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