SMTL ID : 6kds.1

Crystal structure of human NRMT2 in complex with alpha-N-monomethylated human CENP-A peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x SAR- PRO- ARG- ARG- ARG- SER: CENP-A peptide(Non-covalent)

SAR-PRO-ARG-ARG-ARG-SER.1: 14 residues within 4Å: Chain A: M.47, M.48, F.51, W.152, N.184, R.187, D.196, S.198, T.200, E.228, Q.229, C.230, I.231 Ligands: SAH.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.51, A:F.51, A:W.152 Hydrogen bonds: A:N.184, A:R.187, A:S.198, A:Q.229, A:I.231 Water bridges: A:Y.37, A:W.152, A:D.183, A:N.184, A:D.196, A:T.200 Salt bridges: A:D.196

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 21 residues within 4Å: Chain A: Y.37, M.47, G.85, S.86, G.87, R.90, V.91, D.107, M.108, M.109, F.112, Y.133, S.134, L.135, Q.136, Q.151, W.152, V.153, H.156, L.157 Ligands: SAR-PRO-ARG-ARG-ARG-SER.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.85, A:G.87, A:M.108, A:L.135, A:Q.136 Water bridges: A:S.134, A:Q.151 Salt bridges: A:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., Substrate engagement regulates state-specific alpha-N methylation of CENP-A by NRMT2. To be published

Release Date

2020-07-08

Peptides

Alpha N-terminal protein methyltransferase 1B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha N-terminal protein methyltransferase 1B

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