SMTL ID : 6kdt.3 (2 other biounits)

Crystal structure of human DNMT3B (Q772R)-DNMT3L complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain B: F.14, D.15, G.16, I.17, T.19, S.37, E.38, V.39, C.40, D.60, V.61, R.62, G.81, P.83, L.104, R.265, S.266, W.267 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:F.14, B:I.17, B:T.19, B:V.39, B:D.60, B:V.61, B:W.267 pi-Stacking: B:F.14

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain B: N.150, F.168, G.170, N.176 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.168, B:G.170, B:N.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, C.C. et al., Structural insights into CpG-specific DNA methylation by human DNA methyltransferase 3B. Nucleic Acids Res. (2020)

Release Date

2020-02-19

Peptides

DNA (cytosine-5)-methyltransferase 3-like: A
DNA (cytosine-5)-methyltransferase 3B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

DNA (cytosine-5)-methyltransferase 3-like

DNA (cytosine-5)-methyltransferase 3B

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