SMTL ID : 6kgi.1

RLGS-yUbr1 Ubr box

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.04 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.15, R.17, C.40, C.43, C.67, C.69 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.15, A:C.40, A:C.43, A:C.67 ZN.2: 5 residues within 4Å: Chain A: C.28, E.30, C.31, H.49, H.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.28, A:C.31, A:H.49, A:H.52 ZN.3: 5 residues within 4Å: Chain A: H.10, C.15, C.43, C.69, C.81 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.10, A:C.43, A:C.69, A:C.81 ZN.4: 6 residues within 4Å: Chain B: C.15, R.17, C.40, C.43, C.67, C.69 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.15, B:C.40, B:C.43, B:C.67 ZN.5: 5 residues within 4Å: Chain B: C.28, E.30, C.31, H.49, H.52 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.28, B:C.31, B:H.49, B:H.52 ZN.6: 5 residues within 4Å: Chain B: H.10, C.15, C.43, C.69, C.81 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.10, B:C.43, B:C.69, B:C.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, L. et al., Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem. (2020)

Release Date

2020-01-22

Peptides

E3 ubiquitin-protein ligase UBR1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

E3 ubiquitin-protein ligase UBR1