- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.01 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
ZN.1: 5 residues within 4Å:- Chain A: H.83, H.120, E.147
- Ligands: ZN.2, MES.4
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.83, A:H.120, A:E.147, A:E.147
ZN.2: 7 residues within 4Å:- Chain A: E.147, D.184, H.223, N.225, E.276
- Ligands: ZN.1, MES.4
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.147, A:D.184, A:H.223, A:E.276
ZN.3: 5 residues within 4Å:- Chain A: D.184, H.187, D.236, H.238
- Ligands: MES.4
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.187, A:D.236, A:D.236, A:H.238
ZN.5: 6 residues within 4Å:- Chain B: D.184, H.187, D.236, H.238
- Chain C: G.17
- Ligands: MES.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.187, B:D.236, B:D.236, B:H.238
ZN.6: 8 residues within 4Å:- Chain B: E.147, D.184, H.187, H.223, N.225, E.276
- Ligands: ZN.7, MES.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.147, B:D.184, B:H.223, B:E.276
ZN.7: 5 residues within 4Å:- Chain B: H.83, H.120, E.147
- Ligands: ZN.6, MES.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.83, B:H.120, B:E.147
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.4: 13 residues within 4Å:- Chain A: H.83, H.120, E.147, D.184, H.187, H.223, D.236, H.238, E.276
- Chain D: G.16
- Ligands: ZN.1, ZN.2, ZN.3
4 PLIP interactions:4 interactions with chain A- Salt bridges: A:H.83, A:H.120, A:H.187, A:H.238
MES.8: 13 residues within 4Å:- Chain B: H.83, H.120, E.147, D.184, H.187, H.223, D.236, H.238, E.276
- Chain C: G.17
- Ligands: ZN.5, ZN.6, ZN.7
5 PLIP interactions:5 interactions with chain B- Salt bridges: B:H.83, B:H.120, B:H.187, B:H.223, B:H.238
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Y. et al., A unique DNA-binding mode of African swine fever virus AP endonuclease. Cell Discov (2020)
- Release Date
- 2020-06-03
- Peptides
- Probable AP endonuclease: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.01 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, Y. et al., A unique DNA-binding mode of African swine fever virus AP endonuclease. Cell Discov (2020)
- Release Date
- 2020-06-03
- Peptides
- Probable AP endonuclease: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C