SMTL ID : 6kk3.1

Crystal structure of Zika NS2B-NS3 protease with compound 4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DUU: 1-[(10~{R},17~{S},20~{S})-17,20-bis(4-azanylbutyl)-4,9,16,19,22-pentakis(oxidanylidene)-3,8,15,18,21-pentazabicyclo[22.2.2]octacosa-1(26),24,27-trien-10-yl]guanidine(Non-covalent)

DUU.1: 20 residues within 4Å: Chain A: G.33, D.34, F.35, S.36 Chain B: H.35, D.59, D.113, Y.114, P.115, A.116, S.119, Y.134, G.135, N.136, G.137, V.138, V.139, G.143, S.144, Y.145 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.134, B:Y.145 Hydrogen bonds: B:S.119, B:G.135, B:N.136, B:G.137, B:G.143, A:S.36 Water bridges: B:D.113, B:D.113, A:F.35 Salt bridges: B:D.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Braun, N.J. et al., Structure-Based Macrocyclization of Substrate Analogue NS2B-NS3 Protease Inhibitors of Zika, West Nile and Dengue viruses. Chemmedchem (2020)

Release Date

2020-06-17

Peptides

Genome polyprotein: A
Genome polyprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Genome polyprotein

Genome polyprotein

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