SMTL ID : 6kl6.2 (1 other biounit)

Crystal structure of MERS-CoV N-NTD complexed with 5-Benzyloxygramine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

homo-dimer

Ligands

1 x DJU: N,N-dimethyl-1-(5-phenylmethoxy-1H-indol-3-yl)methanamine(Non-covalent)

DJU.1: 14 residues within 4Å: Chain A: V.20, G.83, T.84, G.85, A.88, T.116 Chain B: W.22, N.45, N.47, S.48, T.49, Q.52, Y.81, F.114 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.88, B:F.114, B:F.114 Hydrogen bonds: A:G.85 Water bridges: A:V.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, S.M. et al., Structure-Based Stabilization of Non-native Protein-Protein Interactions of Coronavirus Nucleocapsid Proteins in Antiviral Drug Design. J.Med.Chem. (2020)

Release Date

2020-03-25

Peptides

Nucleoprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Nucleoprotein

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