SMTL ID : 6klk.1

Crystal structure of the Pseudomonas aeruginosa dihydropyrimidinase complexed with 5-FU

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

1 x URF: 5-FLUOROURACIL(Non-covalent)

URF.1: 15 residues within 4Å: Chain A: H.61, L.64, F.66, K.150, F.152, Y.155, H.183, M.288, S.289, D.316, C.318, N.337, G.338 Ligands: ZN.2, ZN.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.289, A:S.289, A:N.337

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.59, H.61, K.150, D.316 Ligands: URF.1, ZN.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.59, A:H.61, A:D.316 ZN.3: 6 residues within 4Å: Chain A: K.150, H.183, H.239, S.289 Ligands: URF.1, ZN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.183, A:H.239 ZN.4: 5 residues within 4Å: Chain B: H.59, H.61, K.150, D.316 Ligands: ZN.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.59, B:H.61, B:D.316 ZN.5: 5 residues within 4Å: Chain B: H.59, K.150, H.183, H.239 Ligands: ZN.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y.H. et al., Crystal structure of dihydropyrimidinase in complex with anticancer drug 5-fluorouracil. Biochem.Biophys.Res.Commun. (2019)

Release Date

2019-11-06

Peptides

D-hydantoinase/dihydropyrimidinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-hydantoinase/dihydropyrimidinase

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