- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 3 residues within 4Å:- Chain A: H.20, T.22, D.140
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.20, A:T.22
- Water bridges: A:G.172
GOL.5: 3 residues within 4Å:- Chain A: R.44, S.48, E.354
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.44, A:R.44
- Water bridges: A:S.48, A:S.48, A:G.353
GOL.6: 7 residues within 4Å:- Chain A: L.153, N.154, V.157
- Chain B: L.229, E.230, Y.301, M.302
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:L.153, B:E.230, B:M.302
- Water bridges: B:L.229
GOL.9: 3 residues within 4Å:- Chain B: N.154, Q.155, V.157
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.157
- Water bridges: B:N.45, B:Q.155
GOL.10: 7 residues within 4Å:- Chain B: L.326, D.330, L.332, N.333, T.336, T.338
- Ligands: HEM.7
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:T.338, B:T.338, B:T.338
- Water bridges: B:R.223, B:R.223, B:R.223, B:T.336
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dhankhar, P. et al., Characterization of dye-decolorizing peroxidase from Bacillus subtilis. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-10-21
- Peptides
- Deferrochelatase/peroxidase EfeB: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dhankhar, P. et al., Characterization of dye-decolorizing peroxidase from Bacillus subtilis. Arch.Biochem.Biophys. (2020)
- Release Date
- 2020-10-21
- Peptides
- Deferrochelatase/peroxidase EfeB: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
E