SMTL ID : 6kng.1

CryoEM map and model of Nitrite Reductase at pH 8.1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.89, C.130, H.139, M.144 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.89, A:C.130, A:H.139 CU.2: 3 residues within 4Å: Chain A: H.94, H.129 Chain C: H.300 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Metal complexes: A:H.94, A:H.129, C:H.300 CU.3: 4 residues within 4Å: Chain B: H.89, C.130, H.139, M.144 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.89, B:C.130, B:H.139 CU.4: 3 residues within 4Å: Chain A: H.300 Chain B: H.94, H.129 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.300, B:H.94, B:H.129 CU.5: 4 residues within 4Å: Chain C: H.89, C.130, H.139, M.144 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.89, C:C.130, C:H.139 CU.6: 3 residues within 4Å: Chain B: H.300 Chain C: H.94, H.129 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Metal complexes: B:H.300, C:H.94, C:H.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adachi, N. et al., 2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy. J.Struct.Biol. (2021)

Release Date

2020-08-12

Peptides

Copper-containing nitrite reductase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Copper-containing nitrite reductase

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