SMTL ID : 6ko1.1 (1 other biounit)

The crystal structue of PDE10A complexed with 2d

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.78, H.82, H.116, D.117, D.227 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.82, A:H.116, A:D.117, A:D.227, H2O.2

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.117, E.145, H.148 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.117, A:E.145, H2O.1, H2O.2

1 x DL0: 6-chloranyl-3-[2-(5-methyl-1-phenyl-benzimidazol-2-yl)ethyl]chromen-4-one(Non-covalent)

DL0.3: 14 residues within 4Å: Chain A: Y.77, L.228, S.230, V.231, I.245, Y.246, F.249, P.265, M.266, E.274, G.278, Q.279, G.281, F.282 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.228, A:I.245, A:F.249, A:P.265, A:E.274, A:F.282, A:F.282 Hydrogen bonds: A:Y.246, A:Q.279 pi-Stacking: A:F.282, A:F.282 Halogen bonds: A:L.228, A:S.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Y.F. et al., Discovery and Optimization of Chromone Derivatives as Novel Selective Phosphodiesterase 10 Inhibitors. Acs Chem Neurosci (2020)

Release Date

2020-04-01

Peptides

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A

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