SMTL ID : 6ko5.1

Complex structure of Ghrelin receptor with Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x 8QX: 6-(4-bromanyl-2-fluoranyl-phenoxy)-2-methyl-3-[[(3~{S})-1-propan-2-ylpiperidin-3-yl]methyl]pyrido[3,2-d]pyrimidin-4-one(Non-covalent)

8QX.1: 16 residues within 4Å: Chain A: D.177, R.180, Q.198, S.201, E.202, I.256, L.259, V.260, P.278, L.288, F.357, R.361, F.364, F.387, F.390, Y.391 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.256, A:L.259, A:V.260, A:F.357, A:F.387, A:F.390, A:F.390 Hydrogen bonds: A:R.361 Salt bridges: A:D.177 pi-Cation interactions: A:R.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shiimura, Y. et al., Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode. Nat Commun (2020)

Release Date

2020-08-12

Peptides

Chimera of Soluble cytochrome b562 and Growth hormone secretagogue receptor type 1: A
Fab7881 Heavy Chain: B
Fab7881 Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
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Chimera of Soluble cytochrome b562 and Growth hormone secretagogue receptor type 1

Fab7881 Heavy Chain

Fab7881 Light Chain

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