SMTL ID : 6kpt.1

Crystal Structure of Acyl-CoA Dehydrogenase FadE5 from Mycobacteria smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 37 residues within 4Å: Chain A: M.162, V.163, L.164, T.165, G.170, S.171, R.195, F.196, I.197, T.198, K.258, L.261, T.266, I.442, L.445, Y.446, E.447, G.448, T.449, A.451, I.452, Q.455 Chain B: Y.322, R.326, Q.328, G.329, I.345, H.348, D.350, V.351, Q.420, T.421, L.422, G.423, G.424, S.425, F.427 35 PLIP interactions: 23 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:F.196, A:K.258, A:T.266, A:I.442, A:Y.446 Hydrogen bonds: A:M.162, A:L.164, A:T.165, A:T.165, A:T.165, A:G.170, A:S.171, A:S.171, A:T.198, A:T.198, A:E.447, A:G.448, A:Q.455, B:Q.420, B:G.424 Water bridges: A:R.195, A:T.449, A:T.449, A:T.450, A:Q.455, B:R.326, B:R.326, B:Q.328, B:A.330, B:H.348, B:S.425, B:S.425 Salt bridges: B:R.326, B:R.326 pi-Stacking: B:H.348 FAD.2: 37 residues within 4Å: Chain A: Y.322, R.326, Q.328, G.329, I.345, H.348, D.350, V.351, Q.420, T.421, L.422, G.423, G.424, S.425, F.427 Chain B: M.162, V.163, L.164, T.165, G.170, S.171, R.195, F.196, I.197, T.198, K.258, L.261, T.266, I.442, L.445, Y.446, E.447, G.448, T.449, A.451, I.452, Q.455 35 PLIP interactions: 21 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:F.196, B:T.266, B:I.442, B:Y.446 Hydrogen bonds: B:M.162, B:L.164, B:T.165, B:T.165, B:G.170, B:S.171, B:S.171, B:T.198, B:T.198, B:L.445, B:E.447, B:G.448, B:T.449, B:Q.455, A:G.424, A:S.425 Water bridges: B:R.195, B:T.449, B:A.451, A:Y.322, A:Y.322, A:R.326, A:R.326, A:R.326, A:Q.328, A:A.330, A:A.330, A:H.348 Salt bridges: A:R.326, A:R.326 pi-Stacking: A:H.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Structural basis for the broad substrate specificity of two acyl-CoA dehydrogenases FadE5 from mycobacteria. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-07-01

Peptides

Acyl-CoA dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-CoA dehydrogenase

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