SMTL ID : 6kqi.1

Structure of an allosteric modulator bound to the CB1 cannabinoid receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

monomer

Ligands

1 x 9GF: 2-[(1R,2R,5R)-5-hydroxy-2-(3-hydroxypropyl)cyclohexyl]-5-(2-methyloctan-2-yl)phenol(Non-covalent)

9GF.1: 19 residues within 4Å: Chain A: F.78, S.81, F.82, F.85, H.86, K.100, L.101, V.104, T.105, I.175, F.176, Y.183, L.184, W.187, W.429, L.432, M.436, F.452, S.456 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.85, A:F.85, A:L.101, A:V.104, A:T.105, A:F.176, A:F.176, A:Y.183, A:L.184, A:W.187, A:W.187, A:W.429, A:L.432, A:F.452 Hydrogen bonds: A:S.81, A:K.100, A:S.456 pi-Stacking: A:F.78, A:F.176

1 x 9GL: 5-chloro-3-ethyl-N-{2-[4-(piperidin-1-yl)phenyl]ethyl}-1H-indole-2-carboxamide(Non-covalent)

9GL.2: 7 residues within 4Å: Chain A: H.62, G.65, S.66, C.146, W.149, T.150, I.153 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.153

4 x OLA: OLEIC ACID(Non-covalent)

OLA.3: 5 residues within 4Å: Chain A: L.447, V.451, F.454, C.455, L.458 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.451, A:V.451, A:F.454, A:L.458 OLA.4: 4 residues within 4Å: Chain A: W.163, L.168, F.186 Ligands: OLC.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.163, A:W.163, A:W.163, A:F.186 OLA.5: 2 residues within 4Å: Chain A: L.32 Ligands: OLA.6 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.32 OLA.6: 5 residues within 4Å: Chain A: L.32, T.33, T.36, F.37 Ligands: OLA.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.32, A:T.33, A:T.36, A:F.37

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-functional Binders)

OLC.7: 1 residues within 4Å: Ligands: OLA.4 No protein-ligand interaction detected (PLIP) OLC.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 3 residues within 4Å: Chain A: I.120, V.136, K.140 No protein-ligand interaction detected (PLIP) PEG.10: 2 residues within 4Å: Chain A: R.478, F.481 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, Z. et al., Structure of an allosteric modulator bound to the CB1 cannabinoid receptor. Nat.Chem.Biol. (2019)

Release Date

2019-10-23

Peptides

Cannabinoid receptor 1,GlgA glycogen synthase,Cannabinoid receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Cannabinoid receptor 1,GlgA glycogen synthase,Cannabinoid receptor 1