SMTL ID : 6kr2.1 (1 other biounit)

Crystal structure of Dengue virus nonstructural protein NS5 (form 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.06 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.713, H.715, C.729, C.848 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.713, A:H.715, A:C.729, A:C.848 ZN.2: 4 residues within 4Å: Chain A: E.439, H.443, C.448, C.451 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.439, A:H.443, A:C.448, A:C.451

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.3: 16 residues within 4Å: Chain A: S.57, G.82, C.83, G.84, G.87, W.88, T.105, K.106, H.111, E.112, V.131, D.132, V.133, F.134, D.147, I.148 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.57, A:G.82, A:G.87, A:W.88, A:K.106, A:E.112, A:D.132, A:V.133, A:D.147 Water bridges: A:G.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, J. et al., A conformation-based intra-molecular initiation factor identified in the flavivirus RNA-dependent RNA polymerase. Plos Pathog. (2020)

Release Date

2020-04-01

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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