SMTL ID : 6krg.1

Crystal structure of sfGFP Y182TMSiPhe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: K.99, D.100, N.133, V.174, Q.175, L.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.100, A:N.133, A:L.176 GOL.2: 2 residues within 4Å: Chain A: K.99, D.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.99, A:D.100, A:D.100, A:D.100

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: K.52, L.53, P.54, H.137 Ligands: NA.6 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: T.49, R.213 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.56, W.57, P.58 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 1 residues within 4Å: Ligands: CL.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q. et al., DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl 1 H-NMR probe. Nat Commun (2020)

Release Date

2020-09-09

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein