SMTL ID : 6krq.1

Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) 0Cys F80A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-10-mer

Ligands

10 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 10 residues within 4Å: Chain A: P.42, T.46, P.47, V.48, S.49, R.125, M.144 Chain B: A.169, P.187, P.188 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.42 Hydrogen bonds: A:T.46, A:V.48, A:S.49, A:S.49 Salt bridges: A:R.125 CIT.2: 11 residues within 4Å: Chain A: A.169, I.185, P.187, P.188 Chain B: P.42, T.46, P.47, V.48, S.49, R.125, M.144 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:P.42 Hydrogen bonds: B:T.46, B:V.48, B:S.49, B:S.49 Salt bridges: B:R.125 CIT.3: 11 residues within 4Å: Chain C: P.42, T.46, P.47, V.48, S.49, R.125, M.144 Chain D: A.169, I.185, P.187, P.188 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:P.42 Hydrogen bonds: C:T.46, C:V.48, C:S.49 Salt bridges: C:R.125 CIT.4: 10 residues within 4Å: Chain C: A.169, P.187, P.188 Chain D: P.42, T.46, P.47, V.48, S.49, R.125, M.144 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:P.42 Hydrogen bonds: D:T.46, D:V.48, D:S.49 Salt bridges: D:R.125 CIT.5: 10 residues within 4Å: Chain E: P.42, T.46, P.47, V.48, S.49, R.125, M.144 Chain F: A.169, P.187, P.188 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:P.42 Hydrogen bonds: E:T.46, E:V.48, E:S.49 Salt bridges: E:R.125 CIT.6: 10 residues within 4Å: Chain E: A.169, P.187, P.188 Chain F: P.42, T.46, P.47, V.48, S.49, R.125, M.144 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:P.42 Hydrogen bonds: F:T.46, F:V.48, F:S.49, F:S.49 Salt bridges: F:R.125 CIT.7: 11 residues within 4Å: Chain G: P.42, T.46, P.47, V.48, S.49, R.125, M.144, E.145 Chain H: A.169, P.187, P.188 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:P.42 Hydrogen bonds: G:V.48, G:S.49 Salt bridges: G:R.125 CIT.8: 10 residues within 4Å: Chain G: A.169, P.187, P.188 Chain H: P.42, T.46, P.47, V.48, S.49, R.125, M.144 5 PLIP interactions: 5 interactions with chain H Hydrophobic interactions: H:P.42 Hydrogen bonds: H:V.48, H:S.49, H:S.49 Salt bridges: H:R.125 CIT.9: 10 residues within 4Å: Chain I: P.42, T.46, P.47, V.48, S.49, R.125, M.144 Chain J: A.169, P.187, P.188 5 PLIP interactions: 5 interactions with chain I Hydrophobic interactions: I:P.42 Hydrogen bonds: I:V.48, I:S.49, I:S.49 Salt bridges: I:R.125 CIT.10: 10 residues within 4Å: Chain I: A.169, P.187, P.188 Chain J: P.42, T.46, P.47, V.48, S.49, R.125, M.144 5 PLIP interactions: 5 interactions with chain J Hydrophobic interactions: J:P.42 Hydrogen bonds: J:V.48, J:S.49, J:S.49 Salt bridges: J:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Himiyama, T. et al., Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation. Protein Sci. (2020)

Release Date

2020-07-01

Peptides

Peroxiredoxin: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Peroxiredoxin