SMTL ID : 6ksl.1

Staphylococcus aureus lipase - S116A inactive mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.78, H.98, H.104, D.250 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.78, A:D.78, A:H.98, A:H.104, A:D.250 ZN.5: 5 residues within 4Å: Chain B: S.75, D.78, H.98, H.104, D.250 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.78, B:H.98, B:H.104, B:D.250, B:D.250

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: G.297, D.362, D.365, D.370, D.373 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.297, A:D.362, A:D.365, A:D.370, A:D.373 CA.6: 5 residues within 4Å: Chain B: G.297, D.362, D.365, D.370, D.373 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:G.297, B:D.362, B:D.365, B:D.370, B:D.373

3 x DAO: LAURIC ACID(Non-covalent)

DAO.3: 8 residues within 4Å: Chain A: F.31, A.130, M.131, A.188, M.202, L.256, V.323, H.363 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.188, A:L.256, A:L.256, A:V.323, A:V.323 Hydrogen bonds: A:F.31, A:M.131 Salt bridges: A:H.363 DAO.7: 9 residues within 4Å: Chain B: G.30, F.31, A.130, M.131, A.188, F.192, L.256, V.323, H.363 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.31, B:A.130, B:F.192, B:L.256, B:V.323, B:V.323 Hydrogen bonds: B:F.31, B:M.131 Salt bridges: B:H.363 DAO.8: 3 residues within 4Å: Chain B: F.192, L.301, T.304 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.192

2 x BUA: butanoic acid(Non-covalent)

BUA.4: 3 residues within 4Å: Chain A: F.192, L.301, T.304 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.192 BUA.9: 4 residues within 4Å: Chain B: Y.43, Y.46, V.364, I.367 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitadokoro, K. et al., Crystal structure of pathogenic Staphylococcus aureus lipase complex with the anti-obesity drug orlistat. Sci Rep (2020)

Release Date

2020-04-08

Peptides

Lipase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lipase 2