SMTL ID : 6ku8.1

structure of HRV-C 3C protein with rupintrivir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x AG7: 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER(Non-covalent)

AG7.1: 18 residues within 4Å: Chain A: K.25, F.28, H.43, E.74, L.130, S.131, N.133, T.135, T.145, K.146, P.147, G.148, Q.149, C.150, H.164, V.165, G.166, G.167 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.28, A:H.43, A:E.74, A:L.130, A:P.147 Hydrogen bonds: A:S.131, A:T.145, A:G.148, A:V.165, A:G.167, A:G.167 Water bridges: A:C.150, A:N.168 Halogen bonds: A:N.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, S. et al., Structure of the HRV-C 3C-Rupintrivir Complex Provides New Insights for Inhibitor Design. Virol Sin (2020)

Release Date

2020-03-25

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein