SMTL ID : 6kug.1

Crystal structure of YBX1 CSD with RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x G- C- C- U: RNA (5'-R(P*GP*CP*CP*U)-3')(Non-covalent)

G-C-C-U.1: 15 residues within 4Å: Chain A: K.14, W.15, N.17, R.19, N.20, Y.22, F.24, D.33, F.35, H.37, T.39, K.68, G.69, A.70, E.71 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zou, F. et al., DrosophilaYBX1 homolog YPS promotes ovarian germ line stem cell development by preferentially recognizing 5-methylcytosine RNAs. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-02-05

Peptides

Nuclease-sensitive element-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclease-sensitive element-binding protein 1

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