SMTL ID : 6kv9.1

MoeE5 in complex with UDP-glucuronic acid and NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.25, A.27, G.28, F.29, I.30, D.49, R.50, R.51, G.73, D.74, L.75, L.93, A.94, A.95, P.97, C.112, A.135, S.136, S.137, Y.160, K.164, F.189, T.191, V.192, R.198, M.201 Ligands: UGA.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:F.189 Hydrogen bonds: A:F.29, A:I.30, A:R.50, A:R.51, A:R.51, A:D.74, A:L.75, A:L.93, A:A.95, A:Y.160, A:K.164, A:V.192 Water bridges: A:G.28, A:G.31, A:N.76 Salt bridges: A:R.198, A:R.198 NAD.3: 27 residues within 4Å: Chain B: G.25, A.27, G.28, F.29, I.30, D.49, R.50, R.51, G.73, D.74, L.75, L.93, A.94, A.95, P.97, C.112, A.135, S.136, S.137, Y.160, K.164, F.189, T.191, V.192, R.198, M.201 Ligands: UGA.4 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:F.189 Hydrogen bonds: B:F.29, B:I.30, B:R.50, B:R.51, B:R.51, B:D.74, B:L.75, B:L.93, B:A.95, B:K.164, B:V.192, B:R.198 Water bridges: B:G.28, B:G.31, B:N.76 Salt bridges: B:R.198, B:R.198

2 x UGA: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID(Non-covalent)

UGA.2: 23 residues within 4Å: Chain A: P.97, V.99, R.100, S.137, S.138, S.139, Y.160, F.189, F.190, T.191, R.198, M.201, F.202, R.205, V.216, E.217, I.218, Y.219, Q.224, R.226, V.262, D.288 Ligands: NAD.1 30 PLIP interactions: 30 interactions with chain A Hydrogen bonds: A:P.97, A:S.138, A:S.139, A:Y.160, A:T.191, A:T.191, A:T.191, A:R.198, A:R.198, A:F.202, A:R.205, A:E.217, A:Y.219, A:Q.224, A:R.226, A:D.288 Water bridges: A:R.100, A:R.100, A:R.100, A:R.100, A:S.138, A:I.203, A:R.226, A:D.288, A:D.288, A:D.288 Salt bridges: A:R.100, A:R.100, A:R.226 pi-Stacking: A:Y.219 UGA.4: 23 residues within 4Å: Chain B: P.97, V.99, R.100, S.137, S.138, S.139, Y.160, F.189, F.190, T.191, R.198, M.201, F.202, R.205, V.216, E.217, I.218, Y.219, Q.224, R.226, V.262, D.288 Ligands: NAD.3 31 PLIP interactions: 31 interactions with chain B Hydrogen bonds: B:P.97, B:S.138, B:S.139, B:Y.160, B:Y.160, B:T.191, B:T.191, B:T.191, B:R.198, B:R.198, B:F.202, B:R.205, B:E.217, B:Y.219, B:Q.224, B:R.226, B:D.288 Water bridges: B:R.100, B:R.100, B:R.100, B:R.100, B:S.138, B:I.203, B:Y.219, B:R.226, B:R.226, B:D.288 Salt bridges: B:R.100, B:R.100, B:R.226 pi-Stacking: B:Y.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, H. et al., Structure of an antibiotic-synthesizing UDP-glucuronate 4-epimerase MoeE5 in complex with substrate. Biochem.Biophys.Res.Commun. (2020)

Release Date

2019-11-13

Peptides

MoeE5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MoeE5

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