SMTL ID : 6kvq.1

S. aureus FtsZ in complex with BOFP (compound 3)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: G.12, G.13, G.14, N.17, R.21, G.96, M.97, G.99, G.100, T.101, G.102, T.125, P.127, E.131, R.135, N.158, F.175 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.13, A:G.14, A:N.17, A:R.21, A:R.21, A:G.100, A:T.101, A:G.102, A:E.131, A:R.135, A:R.135, A:N.158, A:N.158 Water bridges: A:G.15, A:T.101, A:T.101, A:T.103, A:T.103, A:T.125 pi-Stacking: A:F.175 pi-Cation interactions: A:F.175

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: L.192, V.195, N.200, L.201 Ligands: DVX.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.192, A:V.195, A:L.201, H2O.5

1 x DVX: [(2R)-2-[3-aminocarbonyl-2,4-bis(fluoranyl)phenoxy]-2-[5-bromanyl-4-[4-(trifluoromethyl)phenyl]-1,3-oxazol-2-yl]ethyl] 3-[2,2-bis(fluoranyl)-10,12-dimethyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.0^{3,7}]dodeca-1(12),4,6,8,10-pentaen-4-yl]propanoate(Non-covalent)

DVX.3: 29 residues within 4Å: Chain A: M.90, F.92, I.154, Q.184, G.185, Q.187, G.188, I.189, D.191, L.192, V.195, G.197, V.199, N.200, L.201, M.210, M.218, I.220, V.222, L.253, N.255, G.287, T.288, V.289, V.299, T.301, V.302, I.303 Ligands: CA.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.184, A:Q.184, A:Q.187, A:I.189, A:I.189, A:D.191, A:I.220, A:V.222, A:V.299, A:V.299, A:I.303, A:I.303 Hydrogen bonds: A:G.197, A:L.201, A:N.255, A:T.288, A:T.301 Halogen bonds: A:L.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Gonzalez, E. et al., Structure-Guided Design of a Fluorescent Probe for the Visualization of FtsZ in Clinically Important Gram-Positive and Gram-Negative Bacterial Pathogens. Sci Rep (2019)

Release Date

2020-01-15

Peptides

Cell division protein FtsZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein FtsZ

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