SMTL ID : 6kvz.1

The structure of EanB/T414V complex with hercynine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x AVJ: N,N,N-trimethyl-histidine(Non-covalent)

AVJ.1: 12 residues within 4Å: Chain A: Y.191, E.214, W.219, G.259, Y.356, Y.358, A.377, Y.378, C.415, V.417, W.419, R.420 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.417, A:W.419 Hydrogen bonds: A:G.259, A:Y.378 Salt bridges: A:E.214 pi-Cation interactions: A:Y.191, A:W.219, A:W.419

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: W.219, N.220, R.269, V.417, D.440, G.441 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:W.219, A:V.417, A:D.440, A:D.440, H2O.6 MG.3: 4 residues within 4Å: Chain A: H.77, D.153, Y.393, H.394 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.77, A:D.153, A:H.394, H2O.4

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: F.248, A.262, G.263, H.264, I.265, R.384 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: C.342, R.344, R.364, I.365, Y.414 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: N.159, R.160, E.178, E.280, D.281, R.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.159, A:R.160, A:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, L. et al., The structure of EanB/T414V complex with hercynine. To Be Published

Release Date

2020-09-09

Peptides

Sulfurtransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sulfurtransferase