SMTL ID : 6kw0.1 (1 other biounit)

The structure of EanB/Y353F-Cys412-persulfide in tetrahedral intermediate state with ergothioneine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: C.342, R.344, R.364, I.365, Y.414 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: W.219, N.220, R.269, T.417, D.440 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:W.219, A:T.417, A:D.440, A:D.440, H2O.1

1 x BR: BROMIDE ION(Non-covalent)

BR.3: 6 residues within 4Å: Chain A: F.248, A.262, G.263, H.264, I.265, R.384 Ligand excluded by PLIP

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 3 residues within 4Å: Chain A: E.38, T.40, S.43 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.38, A:S.43, A:S.43

1 x LW8: trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium(Non-covalent)

LW8.5: 14 residues within 4Å: Chain A: Y.191, E.214, W.219, G.259, F.356, Y.358, A.377, Y.378, C.415, G.416, T.417, G.418, W.419, R.420 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.419 Hydrogen bonds: A:G.259, A:Y.378, A:W.419 Salt bridges: A:E.214 pi-Cation interactions: A:Y.191, A:W.219, A:W.219, A:W.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, L. et al., The structure of EanB/Y353F-Cys412-persulfide in tetrahedral intermediate state with ergothioneine. To Be Published

Release Date

2020-09-09

Peptides

Sulfurtransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sulfurtransferase

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