SMTL ID : 6kwg.1

Crystal Structure Analysis of Endo-beta-1,4-xylanase II Complexed with Xylotriose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP.1: 20 residues within 4Å: Chain A: S.15, W.17, E.43, V.45, Y.76, W.78, E.85, Y.87, R.121, Q.124, P.125, S.126, I.127, I.128, G.129, F.133, Q.135, Y.170, Q.176 Ligands: IOD.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.17

7 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: K.55, T.167, M.168 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: R.118, T.119, Q.120, Y.134 Ligand excluded by PLIP IOD.4: 5 residues within 4Å: Chain A: P.125, S.126, G.129 Ligands: XYP-XYP-XYP.1, XYP-XYP-XYP.1 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: Q.3, P.4, N.18 Ligand excluded by PLIP IOD.6: 4 residues within 4Å: Chain A: R.80, N.81, L.83, I.128 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: H.143, R.144 Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain A: T.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Studying the Role of a Single Mutation of a Family 11 Glycoside Hydrolase Using High-Resolution X-ray Crystallography. Protein J. (2020)

Release Date

2020-12-30

Peptides

Endo-1,4-beta-xylanase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase 2

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