SMTL ID : 6kwn.1

Crystal structure of pSLA-1*1301(F99Y) complex with S-OIV-derived epitope NSDTVGWSW

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASN- SER- ASP- THR- VAL- GLY- TRP- SER- TRP: peptide(Non-covalent)

ASN-SER-ASP-THR-VAL-GLY-TRP-SER-TRP.1: 28 residues within 4Å: Chain A: Y.7, Y.59, E.63, K.66, V.67, N.70, T.73, Y.74, G.77, T.80, L.81, Y.84, L.95, Y.99, R.114, D.116, Y.123, T.143, K.146, W.147, A.150, V.152, R.156, Y.159, L.163, S.167, R.170, Y.171 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:T.73, A:Y.74, A:L.81, A:L.95, A:Y.99, A:A.150, A:V.152, A:Y.159, A:L.163 Hydrogen bonds: A:E.63, A:E.63, A:K.66, A:N.70, A:N.70, A:Y.84, A:Y.99, A:Y.99, A:D.116, A:T.143, A:R.156, A:R.156, A:Y.159, A:S.167, A:S.167, A:R.170, A:R.170 Salt bridges: A:K.146, A:R.156 pi-Stacking: A:Y.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Peptidomes and Structures Illustrate Two Distinguishing Mechanisms of Alternating the Peptide Plasticity Caused by Swine MHC Class I Micropolymorphism. Front Immunol (2021)

Release Date

2020-09-09

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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