SMTL ID : 6kwo.1

Crystal structure of pSLA-1*1301 complex with mutant epitope ESDTVGWSW

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLU- SER- ASP- THR- VAL- GLY- TRP- SER- TRP: peptide(Non-covalent)

GLU-SER-ASP-THR-VAL-GLY-TRP-SER-TRP.1: 29 residues within 4Å: Chain A: L.4, Y.6, M.44, Y.58, E.62, K.65, N.69, T.72, Y.73, G.76, T.79, Y.83, L.94, F.98, R.113, D.115, Y.122, T.142, K.145, W.146, A.149, V.151, R.154, R.155, Y.158, L.162, S.166, R.169, Y.170 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.58, A:K.65, A:T.72, A:Y.73, A:L.94, A:F.98, A:A.149, A:V.151, A:Y.158, A:L.162 Hydrogen bonds: A:Y.6, A:E.62, A:N.69, A:N.69, A:T.72, A:T.79, A:R.154, A:R.154, A:R.155, A:Y.158, A:S.166, A:Y.170, A:Y.170 Water bridges: A:E.62, A:E.62 Salt bridges: A:R.155, A:R.169 pi-Stacking: A:Y.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Peptidomes and Structures Illustrate Two Distinguishing Mechanisms of Alternating the Peptide Plasticity Caused by Swine MHC Class I Micropolymorphism. Front Immunol (2021)

Release Date

2020-09-09

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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