SMTL ID : 6kwr.1

Crystal structure of enterovirus 71 polymerase elongation complex (ddCTP form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.233, D.330 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.233, A:D.330, H2O.1, H2O.3

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.271, H.273, C.282 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.271, A:H.273, A:C.282

1 x DCT: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE(Non-covalent)

DCT.3: 8 residues within 4Å: Chain A: R.174, Y.234, G.236, D.238, D.329 Chain B: G.19, G.20 Chain C: C.13 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.174, A:G.236, A:D.329 Water bridges: A:K.167, A:K.167 Salt bridges: A:R.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shi, W. et al., A nucleobase-binding pocket in a viral RNA-dependent RNA polymerase contributes to elongation complex stability. Nucleic Acids Res. (2020)

Release Date

2019-12-11

Peptides

RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-dependent RNA polymerase

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