SMTL ID : 6kwz.1

Crystal structure of fragmin F3 domain with calcium ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: S.10, N.35, D.36, E.58 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.36, A:E.58, A:E.58, H2O.3, H2O.4 CA.2: 4 residues within 4Å: Chain B: S.10, N.35, D.36, E.58 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:N.35, B:D.36, B:E.58, H2O.8, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takeda, S. et al., Novel inter-domain Ca2+-binding site in the gelsolin superfamily protein fragmin. J.Muscle Res.Cell.Motil. (2020)

Release Date

2020-01-01

Peptides

Actin-binding protein fragmin P: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Actin-binding protein fragmin P