SMTL ID : 6kx1.1

Crystal structure of SN-101 mAb in complex with MUC1 glycopeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Post Translational Modification)

A2G.1: 8 residues within 4Å: Chain B: H.50, S.51, T.116, H.117, V.118 Chain C: T.8, R.9, P.10 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:H.50, B:S.51, B:S.51, C:T.8 Hydrophobic interactions: C:P.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wakui, H. et al., A straightforward approach to antibodies recognising cancer specific glycopeptidic neoepitopes. Chem Sci (2020)

Release Date

2020-07-29

Peptides

Fab Fragment-SN-101-Heavy chain: A
Fab Fragment-SN-101-Light chain: B
Synthetic MUC1 glycopepide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fab Fragment-SN-101-Heavy chain

Fab Fragment-SN-101-Light chain

Synthetic MUC1 glycopepide

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