SMTL ID : 6kx9.1

Crystal structure of 8-mer peptide from avian influenza H5N1 virus in complex with BF2*1501

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ARG- ALA- LEU- ARG- GLU- GLY- TYR: 8-pepide (ARG-ARG-ALA-LEU-ARG-GLU-GLY-TYR)(Non-covalent)

ARG-ARG-ALA-LEU-ARG-GLU-GLY-TYR.1: 28 residues within 4Å: Chain A: Y.9, S.11, Y.24, D.26, T.36, H.37, Y.38, A.45, E.64, S.68, R.70, T.71, I.74, D.75, G.78, R.85, V.95, L.97, Y.99, D.115, T.142, K.145, W.146, Y.151, Y.158, T.162, W.166, Y.170 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.9, A:Y.99, A:W.146, A:Y.151, A:Y.158 Hydrogen bonds: A:Y.9, A:S.11, A:Y.24, A:Y.24, A:D.26, A:H.37, A:E.64, A:S.68, A:R.70, A:T.71, A:Y.99, A:T.142, A:K.145, A:W.146, A:Y.151, A:Y.158, A:Y.170, A:Y.170 Water bridges: A:T.67, A:T.67, A:T.81 Salt bridges: A:D.26, A:E.64, A:D.75, A:R.85, A:K.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., Structures of the MHC-I molecule BF2*1501 disclose the preferred presentation of an H5N1 virus-derived epitope. J.Biol.Chem. (2020)

Release Date

2020-04-01

Peptides

MHC class I: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I

Beta-2-microglobulin