SMTL ID : 6kxk.5 (7 other biounits)

BON1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 1 residues within 4Å: Chain A: K.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.171, A:K.171 PEG.7: 5 residues within 4Å: Chain A: R.66, L.113, K.114, L.115, D.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.66, A:R.66, A:L.115

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: K.237 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: Q.462, K.465, E.503, S.504, S.505 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.462, A:Q.462 EDO.9: 4 residues within 4Å: Chain A: E.130, Q.363, F.364, K.369 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.369 EDO.10: 3 residues within 4Å: Chain A: V.385, S.386, H.387 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.387 EDO.11: 3 residues within 4Å: Chain A: K.55, R.97, E.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.55, A:R.97

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: R.334, I.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.334, A:I.342 GOL.5: 7 residues within 4Å: Chain A: G.23, L.24, F.25, S.26, Y.86, F.88, P.539 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.24, A:F.88 Water bridges: A:S.26 GOL.6: 6 residues within 4Å: Chain A: Q.54, K.55, K.57, V.91, Q.92, T.93 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.54, A:K.55, A:K.57, A:K.57, A:T.93, A:T.93 Water bridges: A:Q.92 GOL.8: 6 residues within 4Å: Chain A: W.374, N.390, S.395, S.396, Y.397, S.398 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.390, A:N.390, A:S.395, A:S.398 GOL.12: 4 residues within 4Å: Chain A: V.64, F.65, R.66, K.80 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.66, A:K.80 Water bridges: A:E.63, A:E.63, A:K.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Q.C. et al., Crystal Structure of an Arabidopsis Copine providing insights into this protein family. To be published

Release Date

2020-09-16

Peptides

Protein BONZAI 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Protein BONZAI 1