SMTL ID : 6kxy.1

Human PPAR alpha ligand binding domain in complex with a synthetic agonist (compound B)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x T06: 6-ethyl-1-(4-fluorophenyl)-3-pentan-3-yl-pyrazolo[3,4-b]pyridine-4-carboxylic acid(Non-covalent)

T06.1: 17 residues within 4Å: Chain A: I.76, F.77, C.80, Q.81, S.84, Y.118, L.148, L.151, F.155, I.158, M.159, H.244, V.248, I.251, L.260, L.264, Y.268 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.76, A:F.77, A:F.77, A:Q.81, A:L.148, A:F.155, A:I.158, A:V.248, A:I.251, A:L.260 Hydrogen bonds: A:S.84, A:S.84, A:Y.118, A:Y.268 Salt bridges: A:H.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, T. et al., Structural Basis for PPAR alpha Activation by 1H-pyrazolo-[3,4-b]pyridine Derivatives. Sci Rep (2020)

Release Date

2020-05-20

Peptides

Peroxisome proliferator-activated receptor alpha: A
PGC1alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor alpha

PGC1alpha

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