SMTL ID : 6ky5.1 (1 other biounit)

Crystal structure of a hydrolase mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.121, R.168, N.172 Ligands: SO4.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.121, A:N.172 Salt bridges: A:R.168 SO4.2: 5 residues within 4Å: Chain A: A.89, R.90, Q.91, S.92, S.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.90, A:S.93 Water bridges: A:T.88 SO4.3: 1 residues within 4Å: Chain A: R.285 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.285 SO4.4: 3 residues within 4Å: Chain A: N.173, P.174, S.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.175, A:S.175 SO4.5: 4 residues within 4Å: Chain A: Y.32, R.153, K.177, N.264 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.32, A:Y.32, A:N.264 Salt bridges: A:K.177 SO4.6: 2 residues within 4Å: Chain A: A.287, N.288 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.288 Water bridges: A:N.288, A:C.289 SO4.7: 3 residues within 4Å: Chain A: Y.119, S.121, S.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.119, A:Y.119, A:S.121, A:S.122 SO4.8: 5 residues within 4Å: Chain A: S.121, R.168, S.187, Q.188 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.187 Water bridges: A:S.121 Salt bridges: A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, Y.L. et al., Computational redesign of PETase for plasticbiodegradation by GRAPE strategy. Biorxiv (2020)

Release Date

2020-09-23

Peptides

PET hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PET hydrolase

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