SMTL ID : 6kz8.2 (1 other biounit)

Crystal structure of plant Phospholipase D alpha complex with phosphatidic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.187, H.372, H.406, E.722 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.187, A:H.372, A:H.406, A:E.722, A:E.722

1 x PA8: 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)

PA8.2: 18 residues within 4Å: Chain A: W.231, T.330, H.332, R.366, W.405, Q.522, Y.523, E.576, G.577, S.581, S.583, V.584, I.587, H.661, R.682, D.689, L.808, T.809 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.523, A:V.584, A:T.809 Hydrogen bonds: A:T.330, A:Q.522, A:Q.522 Salt bridges: A:H.332, A:H.332, A:H.661, A:R.682

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Crystal structure of plant PLD alpha 1 reveals catalytic and regulatory mechanisms of eukaryotic phospholipase D. Cell Res. (2020)

Release Date

2019-11-13

Peptides

Phospholipase D alpha 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phospholipase D alpha 1

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