SMTL ID : 6kzc.1

crystal structure of TRKc in complex with 3-(imidazo[1,2-a]pyrazin-3-ylethynyl)-2-methyl-N-(3-((4- methylpiperazin-1-yl)methyl)-5- (trifluoromethyl)phenyl)benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x DZC: 3-(2-imidazo[1,2-a]pyrazin-3-ylethynyl)-2-methyl-~{N}-[3-(4-methylpiperazin-1-yl)-5-(trifluoromethyl)phenyl]benzamide(Non-covalent)

DZC.1: 22 residues within 4Å: Chain A: L.17, V.25, A.43, K.45, E.61, L.64, L.65, L.68, I.73, V.74, F.90, E.91, Y.92, M.93, G.96, F.148, H.150, L.159, I.168, G.169, D.170, F.171 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.25, A:A.43, A:K.45, A:E.61, A:L.64, A:L.65, A:V.74, A:D.170, A:F.171, A:F.171 Hydrogen bonds: A:E.61, A:M.93, A:D.170 Salt bridges: A:D.170 pi-Stacking: A:F.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, S. et al., Design, synthesis and biological evaluation of 3-(imidazo[1,2-a]pyrazin-3-ylethynyl)-2-methylbenzamides as potent and selective pan-tropomyosin receptor kinase (TRK) inhibitors. Eur.J.Med.Chem. (2019)

Release Date

2019-10-09

Peptides

NT-3 growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NT-3 growth factor receptor

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