- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- monomer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 13 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
3PE.8: 14 residues within 4Å:- Chain A: C.869, L.872, M.873, F.917, L.920, T.921, N.952, L.955, K.1462, L.1499, A.1502, L.1506
- Ligands: CA.2, 3PE.16
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.872, A:T.921, A:L.955
- Hydrogen bonds: A:L.920, A:T.921, A:Q.922, A:N.952
- Salt bridges: A:K.1462
3PE.9: 8 residues within 4Å:- Chain A: M.100, M.197, M.870, M.873, S.908, L.909, L.910
- Ligands: 3PE.15
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:M.873, A:L.909
- Hydrogen bonds: A:S.908, A:S.908
3PE.10: 7 residues within 4Å:- Chain A: H.1486, N.1487, W.1489, M.1490, L.1492, S.1496
- Ligands: 3PE.11
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.1486, A:N.1487
3PE.11: 4 residues within 4Å:- Chain A: T.835, L.838, M.839
- Ligands: 3PE.10
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:T.835
3PE.12: 9 residues within 4Å:- Chain A: I.224, F.225, H.367, S.368, R.1686, I.1687, V.1690, L.1691, I.1693
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.225, A:F.225, A:R.1686, A:I.1687, A:V.1690, A:I.1693
- Salt bridges: A:H.367
3PE.13: 7 residues within 4Å:- Chain A: N.339, W.344, W.939, A.1606, H.1609, Q.1611
- Ligands: 3PE.19
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:W.344, A:W.939
- Hydrogen bonds: A:Q.1611
- Salt bridges: A:H.1609
3PE.14: 4 residues within 4Å:- Chain A: F.369, Y.370, G.1766, M.1767
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.369
- Hydrogen bonds: A:Y.370
3PE.15: 8 residues within 4Å:- Chain A: M.873, L.910, I.913, P.1488, W.1489, L.1492, I.1495
- Ligands: 3PE.9
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.910, A:I.913, A:P.1488, A:W.1489, A:W.1489, A:L.1492, A:I.1495
3PE.16: 8 residues within 4Å:- Chain A: C.1396, A.1460, V.1505, L.1813, Q.1816
- Ligands: 3PE.8, 3PE.18, Y01.21
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.1505, A:L.1813
3PE.17: 4 residues within 4Å:- Chain A: G.1721, G.1724, M.1728, F.1773
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.1773
3PE.18: 9 residues within 4Å:- Chain A: L.353, I.379, I.380, F.384, V.1720, G.1724, T.1777, L.1819
- Ligands: 3PE.16
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.353, A:I.379, A:I.380, A:F.384, A:V.1720, A:T.1777
3PE.19: 6 residues within 4Å:- Chain A: F.222, Y.342, S.938, W.939, I.945
- Ligands: 3PE.13
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.222, A:Y.342, A:W.939, A:I.945
3PE.20: 9 residues within 4Å:- Chain A: L.208, L.211, L.215, T.352, I.387, C.390, Q.922, T.949, N.952
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.208, A:L.211, A:L.211, A:L.215, A:N.952
- 2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
Y01.21: 8 residues within 4Å:- Chain A: R.1441, N.1448, G.1450, Q.1451, L.1453, F.1457, T.1801
- Ligands: 3PE.16
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.1453
- Hydrogen bonds: A:N.1448, A:Q.1451
- Salt bridges: A:R.1441
Y01.22: 6 residues within 4Å:- Chain A: G.761, Y.764, N.1448, L.1449, G.1450, L.1453
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.764, A:Y.764, A:N.1448, A:L.1453
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, Y. et al., Cryo-EM structures of apo and antagonist-bound human Cav3.1. Nature (2019)
- Release Date
- 2019-12-18
- Peptides
- Voltage-dependent T-type calcium channel subunit alpha-1G: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- monomer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 13 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
- 2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, Y. et al., Cryo-EM structures of apo and antagonist-bound human Cav3.1. Nature (2019)
- Release Date
- 2019-12-18
- Peptides
- Voltage-dependent T-type calcium channel subunit alpha-1G: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.