SMTL ID : 6l1g.2 (1 other biounit)

Crystal structure of light-dependent protochlorophyllide oxidoreductase from Synechocystis sp. PCC 6803

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.33, S.35, S.36, G.37, V.38, R.58, N.59, K.62, L.82, D.83, L.84, G.85, N.110, A.111, A.112, V.113, T.134, L.163, G.164, Y.213, K.217, Y.243, G.245, C.246, V.247, T.250, P.251, L.252, F.253 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.243 Hydrogen bonds: A:G.33, A:S.35, A:S.35, A:S.35, A:S.36, A:S.36, A:V.38, A:R.58, A:D.83, A:L.84, A:G.85, A:N.110, A:A.112, A:K.217, A:V.247, A:V.247, A:T.250 Water bridges: A:G.33, A:S.36, A:S.36, A:R.58, A:R.58, A:N.110, A:L.252, A:Y.257 Salt bridges: A:R.58, A:K.62 pi-Cation interactions: A:R.58

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: P.24, M.25, K.26, H.52, D.75, R.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.25, A:K.26, A:H.52 Salt bridges: A:R.102 SO4.3: 4 residues within 4Å: Chain A: K.105, D.155, A.156, D.157 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.155, A:A.156, A:D.157 Salt bridges: A:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C.S. et al., Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-04-01

Peptides

Light-dependent protochlorophyllide reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Light-dependent protochlorophyllide reductase

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