SMTL ID : 6l1w.1

Zinc-finger Antiviral Protein (ZAP) bound to RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x C- G- U- C- G- U: RNA (5'-R(*CP*GP*UP*CP*GP*U)-3')(Non-covalent)

C-G-U-C-G-U.1: 18 residues within 4Å: Chain A: R.75, L.88, C.89, K.90, L.91, C.97, H.98, Y.99, L.106, C.107, K.108, Y.109, F.145, E.149, I.150, C.151, K.152, R.171 Protein-ligand interaction information (PLIP) not available

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.89, C.97, C.107, H.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.89, A:C.97, A:C.107, A:H.111 ZN.3: 4 residues within 4Å: Chain A: C.74, C.79, C.83, H.87 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.74, A:C.79, A:C.83, A:H.87 ZN.4: 4 residues within 4Å: Chain A: C.151, C.163, C.169, H.173 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.151, A:C.163, A:C.169, A:H.173 ZN.5: 4 residues within 4Å: Chain A: C.175, C.183, C.188, H.192 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.175, A:C.183, A:C.188, A:H.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, X. et al., Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein. Cell Rep (2020)

Release Date

2020-01-01

Peptides

Zinc finger CCCH-type antiviral protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Zinc finger CCCH-type antiviral protein 1