SMTL ID : 6l2f.1

Crystal structure of a cupin protein (tm1459, H54AH58A mutant) in copper (Cu) substituted form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 2 residues within 4Å: Chain A: H.56, H.96 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.56, A:H.96, H2O.2, H2O.3, H2O.4 CU.3: 2 residues within 4Å: Chain B: H.56, H.96 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.56, B:H.96, H2O.8, H2O.8, H2O.8

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.2: 8 residues within 4Å: Chain A: K.70, T.81, V.82, E.83, F.86, D.101, T.102 Chain B: R.9 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.9, A:K.70

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 6 residues within 4Å: Chain B: A.10, Y.11, R.29, L.44, K.68, E.107 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Water bridges: B:Y.11, A:E.84 Salt bridges: B:K.68, B:E.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujieda, N. et al., Cupin Variants as a Macromolecular Ligand Library for Stereoselective Michael Addition of Nitroalkanes. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-04-01

Peptides

Cupin_2 domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cupin_2 domain-containing protein