SMTL ID : 6l4m.1

Crystal structure of vicilin from Solanum lycopersicum (tomato)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

1 x SAL: 2-HYDROXYBENZOIC ACID(Non-covalent)

SAL.1: 13 residues within 4Å: Chain A: F.218, G.237, M.239, Y.250, N.252, K.257, V.259, I.321, F.329, I.339, V.340, G.341, K.351 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.239, A:V.259, A:V.259 Hydrogen bonds: A:Y.250, A:Y.250, A:N.252 Salt bridges: A:K.257, A:K.351 pi-Stacking: A:F.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shikhi, M. et al., Comparative study of 7S globulin from Corylus avellana and Solanum lycopersicum revealed importance of salicylic acid and Cu-binding loop in modulating their function. Biochem.Biophys.Res.Commun. (2020)

Release Date

2019-12-04

Peptides

Vicilin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vicilin