SMTL ID : 6l4p.1

Crystal structure of the complex between the axonemal outer-arm dynein light chain-1 and microtubule binding domain of gamma heavy chain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: W.131, E.169, K.172, R.173 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.169 Water bridges: A:K.172, A:K.172 Salt bridges: A:K.172, A:R.173

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: S.65, S.66, L.67, S.68, N.88, A.91 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.66, A:L.67, A:S.68, A:S.68, A:N.88 Water bridges: A:S.66, A:S.68

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain B: D.24, L.28, S.121 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.28, B:S.121 Water bridges: B:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toda, A. et al., The complex of outer-arm dynein light chain-1 and the microtubule-binding domain of the gamma heavy chain shows how axonemal dynein tunes ciliary beating. J.Biol.Chem. (2020)

Release Date

2020-02-19

Peptides

Dynein light chain 1, axonemal: A
Flagellar outer dynein arm heavy chain gamma: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dynein light chain 1, axonemal

Flagellar outer dynein arm heavy chain gamma