SMTL ID : 6l4z.4 (3 other biounits)

Crystal structure of Zika NS2B-NS3 protease with compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x E5X: 4-(hydroxymethyl)benzoic acid(Non-covalent)

E5X.1: 9 residues within 4Å: Chain B: H.40, D.118, Y.119, P.120, A.121, S.124, Y.139, G.140, Y.150 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.121 Hydrogen bonds: B:P.120 Water bridges: B:D.118, B:D.118, B:S.124 Salt bridges: B:H.40 pi-Stacking: B:Y.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quek, J.P. et al., Identification and structural characterization of small molecule fragments targeting Zika virus NS2B-NS3 protease. Antiviral Res. (2020)

Release Date

2020-07-15

Peptides

Genome polyprotein: A
Genome polyprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Genome polyprotein

Genome polyprotein