SMTL ID : 6l54.1

Structure of SMG189

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Covalent)

GTP.1: 21 residues within 4Å: Chain C: Q.213, G.214, G.216, K.217, S.218, M.219, V.220, Q.233, R.239, A.240, Q.241, M.245, N.251, Q.252, T.253, P.272, N.372, K.373, N.427, L.428 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:Q.213, C:G.216, C:G.216, C:K.217, C:S.218, C:M.219, C:Q.233, C:Q.233, C:Q.241, C:Q.241, C:N.251, C:Q.252, C:T.253, C:N.372, C:K.373 Salt bridges: C:K.217

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain C: K.217, S.218, T.253 Ligands: GTP.1 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:S.218, C:T.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Cryo-EM structure of SMG1-SMG8-SMG9 complex. Cell Res. (2019)

Release Date

2020-04-15

Peptides

Serine/threonine-protein kinase SMG1: A
Protein SMG8: B
Protein SMG9: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Serine/threonine-protein kinase SMG1

Protein SMG8

Protein SMG9

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