SMTL ID : 6l5o.1

Crystal structure of human DEAD-box RNA helicase DDX21 at post-hydrolysis state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: R.18, G.19, V.20, F.22, F.24, Q.27, R.45, T.46, G.47, T.48, G.49, K.50, T.51, F.52 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:R.18, A:F.22, A:F.24, A:Q.27, A:G.47, A:T.48, A:T.48, A:G.49, A:K.50, A:T.51, A:T.51, A:T.51 Water bridges: A:T.21, A:K.50, A:F.52, A:Q.89, A:Q.89, A:D.93, A:E.154, A:E.154 Salt bridges: A:K.50 pi-Stacking: A:F.24

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.51, D.153 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: L.14, G.17, R.18, D.96, K.99 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.14, A:G.17, A:D.96, A:K.99, A:K.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation. Adv Sci (2020)

Release Date

2020-06-17

Peptides

Nucleolar RNA helicase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleolar RNA helicase 2

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